Sangam: A Confluence of Knowledge Streams

Application of Fourier-transform infrared technology to the classification of harmful algal blooms (HABS)

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dc.creator Kenne, Gabriel Jacob
dc.date 2013-08-06T12:29:01Z
dc.date 2013-08-06T12:29:01Z
dc.date 2013-08-06
dc.date 2013
dc.date August
dc.date.accessioned 2023-04-10T10:08:17Z
dc.date.available 2023-04-10T10:08:17Z
dc.identifier http://hdl.handle.net/2097/16188
dc.identifier.uri http://localhost:8080/xmlui/handle/CUHPOERS/285394
dc.description Master of Public Health
dc.description Department of Diagnostic Medicine/Pathobiology
dc.description Deon Van der Merwe
dc.description Cyanobacteria are Gram-negative photosynthetic bacteria capable of producing toxins responsible for morbidity and mortality in humans and domestic animals. Many are capable of forming concentrated blooms that impact the environment by limiting the growth of sub-surface plants and phytoplankton. Harmful algal blooms (HABs) are also capable of producing multiple types of toxins, creating a potential hazard to recreational water users and animals drinking water from or near a bloom. Characterization of HABs is necessary to prevent these human and animal exposures and includes classifying of the type of cyanobacteria present and whether or not they are capable of toxin production, and the exact type of cyanotoxin that is actually present in bloom. Current methods used to classify cyanobacteria and cyanotoxins include microscopy, bioassays, ELISA, PCR, HPLC, and LC/MS. All of these methods, however, have limitations that include time, labor intensity, or cost. Fourier-Transform Infrared Spectroscopy (FTIR) is another potential tool for cyanobacterial classification that is not limited by these factors. To examine the practicality of this method, library screening with default software algorithms was performed on diagnostic samples received at the Kansas State University Veterinary Diagnostic Lab, followed by PCA of samples meeting minimum quality requirements to produce cluster analyses and dendrograms. Both spectrometers and software packages used were successful at distinguishing cyanobacteria from green algae in clean samples with 89.13% agreement. PCA resulted in clear classification of cyanobacteria or green algae demonstrated by a large order of magnitude difference produced by average Euclidian distance dendrograms. While this method is only capable of differentiating cyanobacteria from green algae or other aquatic environmental constituents, its simple, rapid use and low cost make it a beneficial screening tool when coupled with toxin-detection methods to characterize HABs.
dc.format application/pdf
dc.language en_US
dc.publisher Kansas State University
dc.subject Cyanobacteria
dc.subject Harmful algal bloom
dc.subject Environmental public health
dc.subject Fourier-transform infrared spectroscopy
dc.subject Environmental Health (0470)
dc.subject Public Health (0573)
dc.title Application of Fourier-transform infrared technology to the classification of harmful algal blooms (HABS)
dc.type Thesis


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