Sangam: A Confluence of Knowledge Streams

SUPERSEDED - Analysis of 4 Cortical Parcellation Protocols

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dc.contributor SINAPSE-SPIRIT
dc.contributor Toshiba Medical Visualization Systems Edinburgh (TMVSE)
dc.contributor Tony Watson Scholarship
dc.contributor Canon Medical Research Europe
dc.contributor Mikhael, Shadia
dc.creator Mikhael, Shadia
dc.date 2016-12-06T15:47:19Z
dc.date 2016-12-06T15:47:19Z
dc.date.accessioned 2023-02-17T20:52:23Z
dc.date.available 2023-02-17T20:52:23Z
dc.identifier Mikhael, Shadia. (2016). Analysis of 4 Cortical Parcellation Protocols, [image]. University of Edinburgh. Centre for Clinical Brain Sciences. https://doi.org/10.7488/ds/1576.
dc.identifier https://hdl.handle.net/10283/2212
dc.identifier https://doi.org/10.7488/ds/1576
dc.identifier.uri http://localhost:8080/xmlui/handle/CUHPOERS/243999
dc.description ## This item has been superseded by the one which can be found at https://doi.org/10.7488/ds/1983 . ## Software packages for cortical parcellation generally combine tools which segment the brain into various regions, or volumes, and provide corresponding measurements, or morphometrics. The results are used for volumetric, region-of-interest (ROI) and connectivity analysis, offering a better understanding of these volumes in the population(s) under investigation. It is therefore crucial to understand how these regions are defined, or the segmentation protocol of a package, as this has significant implications on the analysis that follows. Most segmentation protocols consist of a cortical parcellation protocol as well as a subcortical segmentation protocol. Here we focus on the cortical parcellation protocols of 4 software packages- BrainGyrusMapping, FreeSurfer, BrainSuite and BrainVISA- and have identified differences between them with regards to variability handling, as well as inconsistency in gyral border definitions, and limited reference population details. We therefore recommend serious consideration of these aspects while identifying the suitable package.
dc.description See README.txt.
dc.format image/png
dc.format text/plain
dc.format application/eps
dc.format application/eps
dc.format image/png
dc.format application/eps
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dc.format image/tiff
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dc.language eng
dc.publisher University of Edinburgh. Centre for Clinical Brain Sciences
dc.relation https://doi.org/10.7488/ds/1983
dc.rights Creative Commons Attribution 4.0 International Public License
dc.source The T1-weighted volume of sub01, at http://psydata.ovgu.de/studyforrest/structural/sub-01/, has been used to generate the figures
dc.subject cortical
dc.subject parcellation
dc.subject protocol
dc.subject gyrus
dc.subject sulcus
dc.subject variability
dc.subject Medicine and Dentistry::Clinical Medicine
dc.title SUPERSEDED - Analysis of 4 Cortical Parcellation Protocols
dc.type image


Files in this item

Files Size Format View
cortical parcels in the coronal view.png 280.2Kb image/png View/Open
cortical surfaces in FreeSurfer.eps 947.8Kb application/eps View/Open
cortical surfaces in FreeSurfer.tif 3.284Mb image/tiff View/Open
double cingulate sulcal and gyral scenario.eps 1.708Mb application/eps View/Open
double cingulate sulcal and gyral scenario.tif 12.39Mb image/tiff View/Open
interpretation of MarsAtlas for 5 ROIs.png 1.624Mb image/png View/Open
README.txt 1.658Kb text/plain View/Open
sulcal patterns in middle-aged male.eps 219.8Kb application/eps View/Open
sulcal patterns in middle-aged male.tif 1.294Mb image/tiff View/Open
workflow for id ... re packages to analyze.eps 75.58Kb application/eps View/Open
workflow for id ... re packages to analyze.tif 2.516Mb image/tiff View/Open

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